{"id":509,"date":"2023-06-27T02:43:15","date_gmt":"2023-06-27T02:43:15","guid":{"rendered":"https:\/\/website.prod.unilu.spikeseed.cloud\/lcsb-en\/?post_type=research-groups&#038;p=509"},"modified":"2025-10-27T11:04:18","modified_gmt":"2025-10-27T10:04:18","slug":"publications","status":"publish","type":"research-groups","link":"https:\/\/www.uni.lu\/lcsb-en\/research-groups\/computational-biology\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<div class=\"section py-0 static\">\n<section class=\"py-0 wp-block-unilux-blocks-free-section section\"><div class=\"container xl:max-w-screen-xl\"><!-- SecondaryNavigationMirror --><div class=\"js-secondary-nav--sticky wp-block-unilux-blocks-secondary-navigation\" id=\"e6b4fc01-0e12-426f-ab1a-f0805f2dbc18\">\n    <nav id=\"secondary-navigation\" role=\"navigation\" aria-label=\"Secondary menu\" class=\"secondary-nav\">\n        <button class=\"secondary-nav__button btn btn-solid--primary w-full\" aria-expanded=\"false\" aria-controls=\"secondary-navigation__list\" title=\"The selected page is Publications\" type=\"button\">\n            <span class=\"btn__name mr-auto\">Publications<\/span>\n            <svg aria-hidden=\"true\" focusable=\"false\" class=\"icon icon-outline icon--xs\">\n                <use xlink:href=\"https:\/\/www.uni.lu\/wp-content\/themes\/unilux-theme\/assets\/images\/icons\/icons-outline.svg#icon--arrow-down\" \/>\n            <\/svg>\n        <\/button>\n\n        <ul id=\"secondary-navigation__list\" class=\"secondary-nav__list\">\n            <li class=\"secondary-nav__item\">\n    <a href=\"https:\/\/www.uni.lu\/lcsb-en\/research-groups\/computational-biology\/\" target=\"\" rel=\"noreferrer noopener\" class=\"secondary-nav__link \">\n        <svg aria-hidden=\"true\" focusable=\"false\" class=\"icon icon-outline icon--xs\">\n            <use xlink:href=\"https:\/\/www.uni.lu\/wp-content\/themes\/unilux-theme\/assets\/images\/icons\/icons-outline.svg#icon--arrow-right\" \/>\n        <\/svg>\n        <span class=\"secondary-nav__name\">Overview<\/span>\n    <\/a>\n<\/li>\n<li class=\"secondary-nav__item\">\n    <a href=\"https:\/\/www.uni.lu\/lcsb-en\/research-groups\/computational-biology\/research\/\" target=\"\" rel=\"noreferrer noopener\" class=\"secondary-nav__link \">\n        <svg aria-hidden=\"true\" focusable=\"false\" class=\"icon icon-outline icon--xs\">\n            <use xlink:href=\"https:\/\/www.uni.lu\/wp-content\/themes\/unilux-theme\/assets\/images\/icons\/icons-outline.svg#icon--arrow-right\" \/>\n        <\/svg>\n        <span class=\"secondary-nav__name\">Research<\/span>\n    <\/a>\n<\/li>\n<li class=\"secondary-nav__item\">\n    <a href=\"https:\/\/www.uni.lu\/lcsb-en\/research-groups\/computational-biology\/tools\/\" target=\"\" rel=\"noreferrer noopener\" class=\"secondary-nav__link \">\n        <svg aria-hidden=\"true\" focusable=\"false\" class=\"icon icon-outline icon--xs\">\n            <use xlink:href=\"https:\/\/www.uni.lu\/wp-content\/themes\/unilux-theme\/assets\/images\/icons\/icons-outline.svg#icon--arrow-right\" \/>\n        <\/svg>\n        <span class=\"secondary-nav__name\">Tools<\/span>\n    <\/a>\n<\/li>\n<li class=\"secondary-nav__item\">\n    <a href=\"https:\/\/www.uni.lu\/lcsb-en\/research-groups\/computational-biology\/publications\/\" target=\"\" rel=\"noreferrer noopener\" class=\"secondary-nav__link isactived\" aria-current=\"page\">\n        <svg aria-hidden=\"true\" focusable=\"false\" class=\"icon icon-outline icon--xs\">\n            <use xlink:href=\"https:\/\/www.uni.lu\/wp-content\/themes\/unilux-theme\/assets\/images\/icons\/icons-outline.svg#icon--arrow-right\" \/>\n        <\/svg>\n        <span class=\"secondary-nav__name\">Publications<\/span>\n    <\/a>\n<\/li>\n<li class=\"secondary-nav__item\">\n    <a 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class=\"secondary-nav__name\">Join us<\/span>\n    <\/a>\n<\/li>\n        <\/ul>\n    <\/nav>\n<\/div>\n<!-- end SecondaryNavigationMirror --><\/div><\/section>\n\n\n\n<section class=\"wp-block-unilux-blocks-free-section section\"><div class=\"container xl:max-w-screen-xl\">\n<h2 class=\"has-text-align-left wp-block-unilux-blocks-heading\"        id=\"key-publications\"\n    >\nKey publications<\/h2>\n\n\n\n<ol type=\"1\" class=\"ulux-list\">\n<li class=\"ulux-list-item\">Okawa S, et al. (2018) Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. <em>Nature Communications<\/em>; 9(1):2595, doi: 10.1038\/s41467-018-05016-8<\/li>\n\n\n\n<li class=\"ulux-list-item\">De Soysa Y, et al. (2019) Single-cell analysis of cardiogenesis reveals basis for organ-level developmental defects. <em>Nature<\/em>, 572(7767):120-124. doi: 10.1038\/s41586-019-1414-x<\/li>\n\n\n\n<li class=\"ulux-list-item\">Kalamakis G, et al. (2019) Quiescence Modulates Stem Cell Maintenance and Regenerative Capacity in the Aging Brain, <em>Cell<\/em>, 176 &#8211; (6)- 1407-1419.e14, doi: 10.1016\/j.cell.2019.01.040<\/li>\n\n\n\n<li class=\"ulux-list-item\">Jung S, et al. (2021) Leveraging systems biology for predicting modulators of inflammation in patients with COVID-19. <em>Science Advances<\/em>; 7(6): eabe5735. doi: 10.1126\/sciadv.abe5735<\/li>\n\n\n\n<li class=\"ulux-list-item\">Jung S, et al. (2021) Computer-guided design tool to increase the efficiency of cellular conversions. <em>Nature Communications<\/em>; 12:1659, doi: 10.1038\/s41467-021-21801-4<\/li>\n\n\n\n<li class=\"ulux-list-item\">Jung S, et al. (2023) Measuring biological age using a functionally interpretable multi-tissue RNA clock. <em>Aging Cell<\/em>; 22(5):e13799, doi: 10.1111\/acel.13799<\/li>\n\n\n\n<li class=\"ulux-list-item\">Zheng M, et al. (2023) ChemPert: mapping between chemical perturbations and transcriptional response for non-cancer cells. <em>Nucleic Acids Research<\/em>; 51(D1):D877-D889, doi: 10.1093\/nar\/gkac862<\/li>\n\n\n\n<li class=\"ulux-list-item\">Santamaria G, et al. (2025) A Machine-Learning Approach Identifies Rejuvenating Interventions in the Human Brain.\u00a0Adv Sci (Weinh); 12(37):e03344. doi: 10.1002\/advs.202503344.\u00a0<\/li>\n<\/ol>\n\n\n\n<ul class=\"wp-block-unilux-blocks-custom-buttons btn-list\"><li class=\"wp-block-unilux-blocks-custom-button\"    aria-disabled=\"false\"\n    >\n    <a\n        role=\"link\"\n        aria-disabled=\"false\"\n                    href=\"https:\/\/orbilu.uni.lu\/simple-search?query=affil%3A%28Computational+Biology%29&#038;lang_code=en\"\n                target=\"_blank\"\n        class=\"btn btn--secondary\"\n            >Full publication list on ORBilu<\/a>\n<\/li>\n<\/ul>\n<\/div><\/section>\n<\/div>","protected":false},"excerpt":{"rendered":"","protected":false},"author":39,"featured_media":0,"parent":493,"menu_order":0,"template":"","meta":{"featured_image_focal_point":[],"show_featured_caption":false,"ulux_newsletter_groups":"","uluxPostTitle":"Computational Biology","uluxPrePostTitle":"Research Group","_trash_the_other_posts":false,"_price":"","_stock":"","_tribe_ticket_header":"","_tribe_default_ticket_provider":"","_tribe_ticket_capacity":"0","_ticket_start_date":"","_ticket_end_date":"","_tribe_ticket_show_description":"","_tribe_ticket_show_not_going":false,"_tribe_ticket_use_global_stock":"","_tribe_ticket_global_stock_level":"","_global_stock_mode":"","_global_stock_cap":"","_tribe_rsvp_for_event":"","_tribe_ticket_going_count":"","_tribe_ticket_not_going_count":"","_tribe_tickets_list":"[]","_tribe_ticket_has_attendee_info_fields":false},"field-of-interest":[],"organisation":[],"authorship":[39],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO Premium plugin v22.3 (Yoast SEO v22.3) - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Publications Computational Biology - Computational Biology - LCSB research group I 8xav福利导航 of Luxembourg<\/title>\n<meta name=\"description\" content=\"Okawa S, et al. (2018) Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. Nature\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.uni.lu\/lcsb-en\/research-groups\/computational-biology\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications\" \/>\n<meta property=\"og:description\" content=\"Okawa S, et al. (2018) Transcriptional synergy as an emergent property defining cell subpopulation identity enables population shift. 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